• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Jillian's Healthful Eats
  • Home
  • Meet Jillian
  • Recipes
  • Meal Plans
  • Contact Me
  • Work with Me
menu icon
go to homepage
search icon
Homepage link
  • Recipes
  • Meet Jillian
  • Subscribe
  • Contact
  • Work with Me
  • ×
    Home / Desserts / Greek Yogurt Cheesecake Muffins

    Greek Yogurt Cheesecake Muffins

    Published: Apr 6, 2026 Modified: Apr 6, 2026 by jillias4 This post may contain affiliate link. This blog generates income via ads

    Jump to Recipe Print Recipe

    If you're craving something sweet, creamy, and satisfying, but still want to keep things on the lighter side, then these Greek Yogurt Cheesecake Muffins are about to become your new favorite treat. They're soft, slightly tangy, perfectly sweet, and packed with protein!

    A close up of cheesecake muffins topped with blueberries and strawberries.

    These muffins are the perfect balance between indulgent and wholesome. Think cheesecake texture meets grab-and-go convenience. Whether you need a quick breakfast, a midday snack, or a healthier dessert, these muffins deliver every time.

    If you are looking for more healthy on-the-go muffins, then you must try my Raspberry Banana Gluten-Free Chocolate Chip Muffins and my Cottage Cheese Blueberry Muffins.

    Table of contents

    • Ingredients for this high-protein snack idea
    • Directions for Cheesecake Muffins
    • Substitutions and Variations
    • Tips and FAQ's
    • More Healthy Desserts you MUST TRY

    Ingredients for this high-protein snack idea

    All the ingredients needed to make this recipe with labels included.
    • unsalted butter - softened, I always choose unsalted so I can be in charge of the amount of sodium going into my food.
    • Simple Mills Sweet Thins - honey cinnamon or choose your favorite flavor.
    • cream cheese - softened for easier mixing.
    • plain Greek yogurt - the base of your dessert, and also helps with the added protein.
    • coconut sugar - I prefer coconut sugar because it has a lower glycemic index.
    • whole egg and egg white - provides structure and creates a light, airy texture.
    • lemon juice - helps balance the rich, dense cream cheese.
    • pure vanilla extract - enhances, balances, and deepens the overall flavor.

    Directions for Cheesecake Muffins

    Step 1 - Preheat oven to 325 degrees Fahrenheit and line a muffin tin with cupcake liners. Spray with cooking spray and set aside. In a blender, add the Sweet Thins and pulse until crumbles form.

    Step 2 - Add in butter and combine until mixed well.

    Steps 1 and 2 of the cooking process to make this recipe.

    Step 3 - Scoop out the Graham cracker mixture and push down on the bottom of the cupcake liners to make it flat. I used my fingers for this step, but you can also use the back of a spoon. Bake for 8 to 10 minutes. Remove from oven and let cool.

    Step 4 - Meanwhile, make the cream cheese topping. In a stand mixture add your cream cheese and beat until it becomes light and fluffy.

    Steps 3 and 4 of the cooking process to make this recipe.

    Step 5 - Add in yogurt and sugar and mix until smooth.

    Step 6 - Add in egg, egg white, lemon juice, and extract and blend until smooth.

    Steps 5 and 6 of the cooking process to make this recipe.

    Step 7 - Pour batter on top of the cooled Graham cracker crust, filling halfway up. Bake for 18 - 20 minutes.

    Step 8 - Remove from oven and let cool. Then place in the fridge for another 2 hours before eating. Once it's time to eat, top with your favorite berry and devour!

    Steps 7 and 8 of the cooking process to make this recipe.

    Substitutions and Variations

    Plain Greek Yogurt - can also swap in cottage cheese.

    Coconut Sugar - can swap this out for brown sugar or granulated sugar.

    Favorite Berry - top the final muffin with your favorite berry. I have and used blackberries, blueberries, strawberries, or raspberries.

    Tips and FAQ's

    Top Tip!


    Use full-fat Greek yogurt for the best texture. Will help your muffins be creamier and cheesecake-like. You can also use low-fat, but the richness drops a bit.

    Can these muffins be meal-prepped?


    Absolutely! I think they taste better the next day after chilling!

    How can you store these muffins?


    Store in an air-tight container in the fridge for up to 4-5 days.

    More Healthy Desserts you MUST TRY

    • almond flour cookies on a white plate with a checkered napkin
      Almond Flour Cookies
    • 3 almond cookies topped with whipped cream and fresh berris.
      Almond Cookie Fruit Tart
    • A close up of chocolate brownies in a white bowl topped with white powdered sugar and a checkered napkin laid to the side.
      Chocolate Chickpea Brownies
    • A birds-eye view of easy matcha muffins on a cooling rack on top of a white wooden table.
      Easy Matcha Muffins

    If you give this dish a try don't forget to rate the recipe below! Always love hearing what you all think. You can also Stay in touch with me through social media on @Instagram, Pinterest, and Facebook. Don't forget to tag me when you try one of my healthy recipes!



    A birds-eye view of cheesecake muffins on a white plate with blueberries and strawberries.

    Greek Yogurt Cheesecake Muffins

    If you're craving something sweet, creamy, and satisfying, but still want to keep things on the lighter side, then these Greek Yogurt Cheesecake Muffins are about to become your new favorite treat. They're soft, slightly tangy, perfectly sweet, and packed with protein!
    No ratings yet
    Print Pin Rate
    Course: Dessert, Snack
    Cuisine: American
    Diet: Low Fat
    Prep Time: 5 minutes minutes
    Cook Time: 15 minutes minutes
    Total Time: 20 minutes minutes
    Servings: 12 muffins
    Calories: 309kcal
    Author: Jillian Schneider

    Equipment

    • muffin tin
    • stand mixer
    • blender

    Ingredients

    • 2½ tbsp. unsalted butter softened
    • ⅔ cup Simple Mills Sweet Thins honey cinnamon or choose your favorite flavor
    • 8 oz low fat cream cheese
    • ½ cup plain Greek yogurt
    • ¼ cup coconut sugar
    • 1 whole egg
    • 1 egg white
    • ½ tbsp lemon juice
    • 1 tsp pure vanilla extract
    • favorite berry optional topping
    • cooking spray

    Instructions

    • Step 1 - Preheat oven to 325 degrees Fahrenheit and line a muffin tin with cupcake liners. Spray with cooking spray and set aside. In a blender, add the Sweet Thins and pulse until crumbles form.
    • Step 2 - Add in butter and combine until mixed well.
    • Step 3 - Scoop out the Graham cracker mixture and push down on the bottom of the cupcake liners to make it flat. I used my fingers for this step, but you can also use the back of a spoon. Bake for 8 to 10 minutes. Remove from oven and let cool.
    • Step 4 - Meanwhile, make the cream cheese topping. In a stand mixture add your cream cheese and beat until it becomes light and fluffy.
    • Step 5 - Add in yogurt and sugar and mix until smooth.
    • Step 6 - Add in egg, egg white, lemon juice, and extract and blend until smooth.
    • Step 7 - Pour batter on top of the cooled Graham cracker crust, filling halfway up. Bake for 18 - 20 minutes.
    • Step 8 - Remove from oven and let cool. Then place in the fridge for another 2 hours before eating. Once it's time to eat, top with your favorite berry and devour!

    Notes

    Top-Tip!
    Use full-fat Greek yogurt for the best texture. Will help your muffins be creamier and cheesecake-like. You can also use low-fat, but the richness drops a bit.
    How can you store these muffins?
    Store in an air-tight container in the fridge for up to 4-5 days.
    Can these muffins be meal-prepped?
    Absolutely! I think they taste better the next day after chilling!
    How can the kids help?
    • Measuring and pouring - a fun math lesson 😉
    • Teach them how to use a blender (even my 2-year old helps with this)
    • Let them be creative and top with the fruit of their choice! 
     

    Nutrition

    Serving: 1muffin | Calories: 309kcal | Carbohydrates: 33.4g | Protein: 13.5g | Fat: 13.1g | Saturated Fat: 5.9g | Polyunsaturated Fat: 1.6g | Monounsaturated Fat: 3.9g | Cholesterol: 206mg | Sodium: 152.5mg | Potassium: 23mg | Fiber: 9.4g | Sugar: 24.7g | Vitamin A: 93IU | Vitamin C: 635mg | Calcium: 8mg | Iron: 16mg
    Tried this Recipe? Pin it for Later!Mention @JilliansHealthfulEats or tag #jillianshealthfuleats!
    The author of the recipe with a little blonde girl making muffins.

    Jillian is the creator of Jillian's Healthful Eats. She is the one who cooks all the meals, develops all the recipes, takes all the photographs, and washes all the dishes! She is a very busy wife and mother of 4 who enjoys cooking with her children and instilling in them her love for health and nutrition!

    « Cheesy Chicken Broccoli Rice Casserole
    Portobello Mushroom Burgers with Homemade Burger Sauce »

    Reader Interactions

    Leave a Reply Cancel reply

    Your email address will not be published. Required fields are marked *

    Recipe Rating




    This site uses Akismet to reduce spam. Learn how your comment data is processed.

    Primary Sidebar

    Jillian’s Healthful Eats is full of recipes that are dedicated to making your favorite meals in a healthier way! From breakfasts to lunches to dinners you'll find wholesome, clean, dishes the whole family will love :)

    More about me >

    Stay Connected with Me

    Spring Favorites

    • Air Fryer pizza rolls on a cream-colored plate with a side of sauce on a wooden table.
      Air Fryer Pizza Rolls (with tortillas)
    • garlic lemon salmon in a greek yogurt cream sauce
      Lemon Garlic Salmon in a Creamy Greek Yogurt Sauce
    • birds-eye view of ground turkey mac and cheese in a Lodge cast-iron skillet on a white wooden table
      Super Creamy Mac and Cheese with Ground Turkey
    • Birds-eye view of blueberry peanut butter bars and a piece cut out on a dish.
      Blueberry Peanut Butter Bars
    • Birds eye view of bang bang shrimp in a cream colored bowl with fresh parsley scattered on top and a lemon placed next to the bowl.
      Bang Bang Shrimp Pasta with Greek Yogurt
    • close up of italian chicken meatballs on a wooden tray with scattered fresh parsley
      Italian Chicken Meatballs

    Popular Posts

    • A birds-eye view of juicy cranberry meatballs in a cream colored mixing bowl on a white wooden board with a brown and white striped napkin next to the bowl.
      Juicy Cranberry Turkey Meatballs
    • birds-eye view of ground turkey mac and cheese in a Lodge cast-iron skillet on a white wooden table
      Super Creamy Mac and Cheese with Ground Turkey
    • Gluten-Free Fruit Crisp (made with frozen fruit)
    • A fork cutting into an avocado omelette that's sitting on a gray plate.
      Spinach and Avocado Omelette
    • garlic lemon salmon in a greek yogurt cream sauce
      Lemon Garlic Salmon in a Creamy Greek Yogurt Sauce
    • bbq chicken flatbread on a wooden plate with red onion and cilantro sprinkled on top
      BBQ Chicken Flatbread (Panera Copycat)

    Subscribe Here!


    Footer

    ↑ back to top

    About

    • About Me
    • Privacy Policy
    • Disclaimer
    • Accessibility Statement

    Newsletter

    • Sign Up! for emails and updates

    Contact

    • Contact
    • Work with me
    Zero AI Pledge

    As an Amazon Associate, I earn from qualifying purchases.

    Copyright © 2026 Jillian's Healthful Eats

    Rate This Recipe

    Your vote:




    A rating is required
    A name is required
    An email is required